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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4627640_4628275_F

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4627640 - 4628275
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TGGTTGTTGACT
Flanking Amino Acid:
ISKASSTLNGDLRALALLLS
Intron Amino Acid Position:
3267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
92.1
0.95
0.5
92.3
18.1
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
55.3
0.25
2.1
75.02
42.2

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758