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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4636638_4636676_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4636638 - 4636676
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACTTAAAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTGCACTTAAAA
Flanking Amino Acid:
GCVSGEYAELGWRWFKHYAT
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
52.1
0.05
1
46.1
38.8
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
61.7
0.36
1.6
71.63
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005687
4635333 - 4643292
7960