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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4636779_4637434_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4636779 - 4637434
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TTGTGCTGTATT
Flanking Amino Acid:
ELYSVFTTKELVQKFSKCPA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
55.9
0.15
1.2
49
38
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
48
-0
2.2
72.35
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005687
4635333 - 4643292
7960