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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4637558_4638076_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4637558 - 4638076
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
GTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTTTGCTTTACA
Flanking Amino Acid:
ERKLSGNAVQASVSPHSSDI
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.3
0.75
0.9
76.3
37.8
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
61.2
0.35
2.1
76.35
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005687
4635333 - 4643292
7960