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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4638163_4638804_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4638163 - 4638804
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTGTGCTGAACA
Flanking Amino Acid:
LRDYLKALKTEFTLGMILPT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.5
0.75
0.8
78.2
28.9
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
63
0.4
1.9
76.23
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005687
4635333 - 4643292
7960