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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4638920_4639541_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4638920 - 4639541
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTGTCTTAGACT
Flanking Amino Acid:
SEENEVDDTEINVSKKKGEG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.6
0.62
0.9
69.4
41.7
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
59.7
0.39
1.7
75.31
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005498
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005687
4635333 - 4643292
7960