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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46802078_46807009_F

Intron Information:

Intron Rank:
135071
Intron Class:
major
Intron Phase:
Intron Coordinates:
46802078 - 46807009
Intron Length:
4932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTATAC
5'SS Class:
major
3'SS Sequence:
GTTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TGCAGCCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
59.3
33.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
82.5
0.73
0.9
76.8
37.3
Minor 5ss
44.5
-0.6
2.8
55.8
43.9
Minor BPS
41.5
-0.5
2.1
58.48
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036693
46801890 - 46807559
5670
ENSAPLT00000022392
46801890 - 46807559
5670