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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46807088_46807440_F

Intron Information:

Intron Rank:
135072
Intron Class:
major
Intron Phase:
Intron Coordinates:
46807088 - 46807440
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
60.6
0.19
1.5
60.98
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022392
46801890 - 46807559
5670