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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46807088_46808850_F

Intron Information:

Intron Rank:
135075
Intron Class:
major
Intron Phase:
Intron Coordinates:
46807088 - 46808850
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACAATTTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.2
0.81
0.8
83.9
31.1
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
42.8
-0.5
1.6
45.89
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046729
46807033 - 46810250
3218