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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46808953_46809286_F

Intron Information:

Intron Rank:
135076
Intron Class:
major
Intron Phase:
Intron Coordinates:
46808953 - 46809286
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
CTTCACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTGGCTTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.8
0.74
0.8
76.6
31.6
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
47.9
-0
1.9
67.18
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022668
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046729
46807033 - 46810250
3218