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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46836191_46862626_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46836191 - 46862626
Intron Length:
26436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
NCRLAYCISSQMVMLLEWWS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.8
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
45.7
-0.4
3.1
70
40.4
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
AGPAT4
Ensembl Gene ID:
ENSAPLG00000012386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012923
46835960 - 46893164
57205