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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46870870_46872943_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46870870 - 46872943
Intron Length:
2074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCTTTCTAACC
Flanking Amino Acid:
NLRDYPENFWFLIHCEGTRF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.6
0.71
0.8
80.5
31.5
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
57.4
0.21
1.7
67.01
38.8

Associated Gene:

Gene:
AGPAT4
Ensembl Gene ID:
ENSAPLG00000012386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012923
46835960 - 46893164
57205