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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46878694_46879605_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46878694 - 46879605
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTACCATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTCTTCAATT
Flanking Amino Acid:
GKKYHADLYVRRIPLEEVPE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70
0.45
1
66
39.6
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
72.1
0.77
1.4
85.42
34.8

Associated Gene:

Gene:
AGPAT4
Ensembl Gene ID:
ENSAPLG00000012386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012923
46835960 - 46893164
57205