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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46879682_46885415_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46879682 - 46885415
Intron Length:
5734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGGAATTTAATT
Flanking Amino Acid:
NWLHKLYQEKDAFQEEYYRT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.8
0.69
0.9
74.7
40
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
51.5
0.12
1.5
63.22
41

Associated Gene:

Gene:
AGPAT4
Ensembl Gene ID:
ENSAPLG00000012386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012923
46835960 - 46893164
57205