About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46885615_46892313_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46885615 - 46892313
Intron Length:
6699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTCTATTAACT
Flanking Amino Acid:
LASFGFVIVMASVGVRWMIG
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
63
0.49
1.6
78.05
37.3

Associated Gene:

Gene:
AGPAT4
Ensembl Gene ID:
ENSAPLG00000012386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012923
46835960 - 46893164
57205