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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4688926_4693470_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4688926 - 4693470
Intron Length:
4545

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCAGGTAA
5'SS Class:
major
3'SS Sequence:
GCCTTTGACTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CAGCCTTTGACT
Flanking Amino Acid:
STRQINAEKNTISAKHLLQL
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
55.7
39.9
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
55.6
0.13
1.1
59.5
40
Minor 5ss
23.6
-3
4
33.7
42.1
Minor BPS
61.6
0.45
1.3
69.07
42.2

Associated Gene:

Gene:
KIAA1841
Ensembl Gene ID:
ENSAPLG00000005956
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006180
4688827 - 4712233
23407