Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46897815_46897996_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46897815 - 46897996

Intron Length:

182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TTGCACTTAGCA

Flanking Amino Acid:

CVVIEMVTGKRPWHEYEHNF

Intron Amino Acid Position:

1499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

85.2

32.2

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

85.4

0.8

80.4

31.6

Minor 5ss

37.2

-1.4

3.6

57.3

47.4

Minor BPS

57.2

0.22

1.8

70.24

41.6

Associated Gene:

Gene:

MAP3K4

Ensembl Gene ID:

ENSAPLG00000011460

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035338

46896273 - 46992419

96147

ENSAPLT00000026988

46896273 - 46976277

80005

ENSAPLT00000022054

46896273 - 46976277

80005

ENSAPLT00000039938

46896819 - 46976277

79459

ENSAPLT00000012041

46896819 - 46971430

74612

ENSAPLT00000036713

46896273 - 46992419

96147