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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46904876_46906237_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46904876 - 46906237
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTCCCACAACA
Flanking Amino Acid:
VRYFGVELHREEMYIFMEYC
Intron Amino Acid Position:
1369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
74.1
38.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.1
0.36
1
59.8
35.5
Minor 5ss
38.3
-1.3
2.8
40.3
45.6
Minor BPS
55.7
0.18
1.9
71.78
39.3

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147