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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46912624_46916253_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
46912624 - 46916253
Intron Length:
3630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTCA
5'SS Class:
weak_major
3'SS Sequence:
CTCTATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTCTATTTAACA
Flanking Amino Acid:
PKSVSIANDTRGSSVPENDR
Intron Amino Acid Position:
1181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
59.5
42.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
76.8
0.6
0.9
72.6
36.1
Minor 5ss
48.3
-0.2
2.9
65.5
45.7
Minor BPS
66.3
0.51
1.5
71.69
40.8

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005