About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46916371_46917263_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46916371 - 46917263
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGTC
5'SS Class:
major
3'SS Sequence:
CTTCTTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTCCTGAGGT
Flanking Amino Acid:
HLIIPTPEGFSTRSVPCDAR
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
67.9
35.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.3
0.61
0.8
71.8
32.8
Minor 5ss
41.1
-1
3.4
59.1
45.7
Minor BPS
55
0.24
2
77.99
43.9

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000036713
46896273 - 46992419
96147