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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46918170_46920593_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46918170 - 46920593
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATATCACAACC
Flanking Amino Acid:
ISALPEDDFLSLQALMNECI
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83.8
0.76
0.8
77.4
36.9
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
47.7
-0.1
1.8
60.29
38

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147