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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46920673_46922509_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46920673 - 46922509
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
TTCTTTGAGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CTTTCTTTGAGA
Flanking Amino Acid:
KCESGRGTRPRWATQGFDFL
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
66.8
0.38
1.1
65.2
40.4
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
65
0.46
1.6
73.66
38.8

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000022054
46896273 - 46976277
80005