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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46924832_46926817_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46924832 - 46926817
Intron Length:
1986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTTTTT
5'SS Class:
major
3'SS Sequence:
CTTGTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAA
U12 Branch Point Sequence:
TATGTAAGAACT
Flanking Amino Acid:
ETVDTLRSIQVDNLLLVVIQ
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
34.7
Major BPS
54.5
0.11
1.4
55.7
41.6
Major PPT
70
0.45
1
63.5
41.9
Minor 5ss
39.4
-1.2
3.3
57.9
46.8
Minor BPS
45.3
-0.2
2
68.2
41.9

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005