Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46924832_46928799_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46924832 - 46928799

Intron Length:

3968

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTCA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTATTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGTAA

U12 Branch Point Sequence:

TATGTAAGAACT

Flanking Amino Acid:

NALKTKEYVKVDNLLLVVIQ

Intron Amino Acid Position:

820

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.1

28.4

Major BPS

54.5

0.11

1.4

55.7

41.6

Major PPT

0.45

63.5

41.9

Minor 5ss

39.8

-1.1

2.8

50.7

45.7

Minor BPS

45.3

-0.2

68.2

41.9

Associated Gene:

Gene:

MAP3K4

Ensembl Gene ID:

ENSAPLG00000011460

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039938

46896819 - 46976277

79459