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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46927085_46928799_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46927085 - 46928799
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
NALKTKEYVKVQIPGLENLQ
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005