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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46929092_46929511_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46929092 - 46929511
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAGC
5'SS Class:
major
3'SS Sequence:
ATCAATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATCAATA
Flanking Amino Acid:
ADDSTASDEIRRSVIETSRA
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.4
39.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.6
0.46
1
62.9
42
Minor 5ss
40
-1.1
2.8
52.9
43.9
Minor BPS
53.3
0.1
1.8
70.17
35.7

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000039938
46896819 - 46976277
79459