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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46936532_46940625_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46936532 - 46940625
Intron Length:
4094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATGACA
Flanking Amino Acid:
ALVRSDCQLEFSEFPDPMLC
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
88.4
0.86
0.8
83.5
31.6
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
63.3
0.41
1.6
74.82
36.6

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000035338
46896273 - 46992419
96147