About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46942008_46957660_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46942008 - 46957660
Intron Length:
15653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCAGAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
GRPASRATLKEKMSVPAQAV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
56.4
0.16
1.3
54.7
43.1
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022054
46896273 - 46976277
80005
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000012041
46896819 - 46971430
74612
ENSAPLT00000036713
46896273 - 46992419
96147
ENSAPLT00000035338
46896273 - 46992419
96147
ENSAPLT00000026988
46896273 - 46976277
80005