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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_46957852_46975827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46957852 - 46975827
Intron Length:
17976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTATTTTTAACA
Flanking Amino Acid:
LSDGLLDIKCRKECKSEDAT
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.3
0.84
0.7
85.6
28.8
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
74.6
0.77
1.1
76.5
34.2

Associated Gene:

Gene:
MAP3K4
Ensembl Gene ID:
ENSAPLG00000011460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039938
46896819 - 46976277
79459
ENSAPLT00000026988
46896273 - 46976277
80005
ENSAPLT00000022054
46896273 - 46976277
80005