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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47026269_47027627_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47026269 - 47027627
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCATCCCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCATTTTTAATG
Flanking Amino Acid:
ALLFLLVLGSVKGDVLDDYL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.6
0.58
0.8
70.1
30.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
65.9
0.36
1.3
62.98
39.9

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000042534
47026220 - 47084834
58615