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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47027764_47028947_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47027764 - 47028947
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTTCTCAATT
Flanking Amino Acid:
KCEAERNFTCRAFLYTRKKL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70.6
0.46
1
66
39.4
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
64.1
0.52
1.5
76.5
40.5

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042534
47026220 - 47084834
58615
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615