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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47033823_47034403_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47033823 - 47034403
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
QVMQTTEATEGPTVDCMICN
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
68.6
0.42
0.9
64.7
36.3
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000042534
47026220 - 47084834
58615
ENSAPLT00000039779
47026220 - 47081756
55537