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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47034534_47034660_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47034534 - 47034660
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTCGATGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
CTGTCTTCCATT
Flanking Amino Acid:
EPHMHGYTLKHFPGKDLKMN
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
75.3
0.57
1
69.7
40.6
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
48.4
-0
2
67.18
44.6

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000042534
47026220 - 47084834
58615