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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47034780_47036267_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47034780 - 47036267
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
AATCCTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATC
Flanking Amino Acid:
RWEYCNIPRCTTRPRVSGLS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.8
43.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.8
0.51
1
65
40.4
Minor 5ss
34.6
-1.8
3.1
46.9
42.4
Minor BPS
74.8
0.76
1.1
77
33.7

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042534
47026220 - 47084834
58615