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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47036431_47037323_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47036431 - 47037323
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCTGA
5'SS Class:
weak_major
3'SS Sequence:
GTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTCCATCAGT
Flanking Amino Acid:
HGWIPDRYPCKGLEENYCRN
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
61.4
40.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
53.6
0.12
2.4
63.8
45.8
Minor BPS
51
0.11
2.3
79.27
42.7

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042534
47026220 - 47084834
58615