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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47040202_47041150_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47040202 - 47041150
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACAGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
SVVLTTPTTSDCINGNGKDY
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
67.8
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
37.8
-1.4
3.5
52.6
45.6
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042534
47026220 - 47084834
58615