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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47041300_47077936_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47041300 - 47077936
Intron Length:
36637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAACAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCTTCTTAATA
Flanking Amino Acid:
THPRAGLDKNYCRNPDGDVN
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
68.1
42.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
42.9
-0.8
3.1
61.7
43.2
Minor BPS
80.7
0.96
1
82.43
32.9

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042534
47026220 - 47084834
58615