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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4704924_4705769_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4704924 - 4705769
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATGGAAAA
Flanking Amino Acid:
DCEANDMPTLEPANVISILI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.2
0.73
0.8
74.3
36.5
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
40.1
-0.7
2.1
53.9
37.8

Associated Gene:

Gene:
KIAA1841
Ensembl Gene ID:
ENSAPLG00000005956
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006183
4692544 - 4712233
19690
ENSAPLT00000006180
4688827 - 4712233
23407