About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47071262_47071383_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47071262 - 47071383
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
QPHSHGYLPENFPEKNLKMN
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.9
0.81
0.8
84.9
29.9
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000022386
47026220 - 47084843
58624