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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47073146_47073907_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47073146 - 47073907
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCACTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTCTGTTATTC
Flanking Amino Acid:
SCDGVEQDTAAVDGPEQAQV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.5
0.69
0.9
74.4
34.9
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
48.3
-0.1
2.2
66.92
39.3

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615