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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47074074_47074855_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47074074 - 47074855
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTATGTGTA
5'SS Class:
weak_major
3'SS Sequence:
CTTGCATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TATGCTTGCATT
Flanking Amino Acid:
HNKTSDRFPNADLRQNYCRN
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.4
65
41.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
75.8
0.58
0.9
69.9
35.5
Minor 5ss
43.3
-0.7
3.1
52.6
44.9
Minor BPS
47.9
-0
2
69.43
42.1

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615