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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47078031_47079561_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47078031 - 47079561
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAATTATT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AGTTCCTCATAG
Flanking Amino Acid:
AWEYCDIPKCPPAQYECGKS
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
75
41
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88
0.86
0.6
85
22.7
Minor 5ss
43.6
-0.7
2.9
65.1
39
Minor BPS
48.1
-0.2
2
56.71
44

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000039779
47026220 - 47081756
55537
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000042534
47026220 - 47084834
58615