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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47079683_47080916_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47079683 - 47080916
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATCAGCT
Flanking Amino Acid:
SWPWQISLRTRSSRPSAYKV
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
64.9
40.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70.3
0.46
0.9
66.9
34
Minor 5ss
37.1
-1.5
3.2
48.2
47.5
Minor BPS
48.8
-0
2.1
71.11
45.1

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030676
47026220 - 47084834
58615