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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47080548_47080916_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47080548 - 47080916
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATCAGCT
Flanking Amino Acid:
WVLTAAHCLEKSSRPSAYKV
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70.3
0.46
0.9
66.9
34
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
48.8
-0
2.1
71.11
45.1

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000042534
47026220 - 47084834
58615
ENSAPLT00000039779
47026220 - 47081756
55537