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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47081058_47082231_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47081058 - 47082231
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGCTCCTGAATG
Flanking Amino Acid:
RVDIALLKLKSPAIINNHVI
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
64.5
0.32
1.5
65.07
42.9

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030676
47026220 - 47084834
58615
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000042534
47026220 - 47084834
58615