Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47082339_47083275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47082339 - 47083275

Intron Length:

937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACAG

5'SS Class:

strong_major

3'SS Sequence:

TTCATTTGCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTATTTTAATA

Flanking Amino Acid:

CYVTGWGDTKGTGGDGYLKE

Intron Amino Acid Position:

701

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

67.7

39.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

64.2

0.32

1.1

66.2

38.7

Minor 5ss

25.9

-2.8

2.9

29.3

43.4

Minor BPS

69.1

0.59

1.2

73.73

31.7

Associated Gene:

Gene:

PLG

Ensembl Gene ID:

ENSAPLG00000010099

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030676

47026220 - 47084834

58615

ENSAPLT00000029792

47026220 - 47084834

58615

ENSAPLT00000022386

47026220 - 47084843

58624

ENSAPLT00000010620

47058510 - 47084834

26325

ENSAPLT00000042534

47026220 - 47084834

58615