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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47083422_47084563_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47083422 - 47084563
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCACTCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGGTCTTTCATT
Flanking Amino Acid:
NIHGGTDSCQGDSGGPLVCL
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
70.7
0.47
0.9
69.4
36.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61
0.43
1.7
76
41.5

Associated Gene:

Gene:
PLG
Ensembl Gene ID:
ENSAPLG00000010099
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029792
47026220 - 47084834
58615
ENSAPLT00000022386
47026220 - 47084843
58624
ENSAPLT00000010620
47058510 - 47084834
26325
ENSAPLT00000042534
47026220 - 47084834
58615
ENSAPLT00000030676
47026220 - 47084834
58615