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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47089222_47089987_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47089222 - 47089987
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCCACCTTTACG
Flanking Amino Acid:
ETVEDVEQLSSPYGKCSKKR
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.6
0.73
0.8
80.4
31.5
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
57
0.08
1.8
60.22
47.2

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172