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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47091355_47091578_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47091355 - 47091578
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CATCTCTCAAAT
Flanking Amino Acid:
VNSELYPTILRNFGVSLCSS
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
51.8
0.13
1.7
68.16
42.1

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172