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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47091688_47094575_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47091688 - 47094575
Intron Length:
2888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTTGAAT
Flanking Amino Acid:
ACLITAFLPEDIPWLKTTVA
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
62.6
0.28
1.2
57.9
46.3
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
64.6
0.54
1.4
79.1
37.4

Associated Gene:

Gene:
SLC22A3
Ensembl Gene ID:
ENSAPLG00000009972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010390
47089164 - 47130335
41172